docs(cleanup): remove redundant root-level bug report and synchronize project documentation to v4.1.3

BOOTSTRAP.md

@@ -2,6 +2,8 @@
 
 This document guides you through the setup and initialization procedures required to adopt the `herdr_agent_orchestration` orchestration and messaging backplane workflow in a new project, enabling a new developer or agent to get up and running quickly.
 
+[![Version: v4.1.3](https://img.shields.io/badge/version-v4.1.3-blue.svg)](VERSIONS.md)
+
 A new agent can follow the steps in this guide sequentially to establish a stable and reliable initial environment.
 
 ---
@@ -27,6 +29,8 @@ Before cloning this project into a new environment, you must first understand th
                 *   `job_subscriber.py`: Background event subscriber and audit log generator.
                 *   `publish_event.py`: Event publisher for runtime states and error traps.
                 *   `mqtt_common.py`: Common utility for connecting to the MQTT broker.
+        *   `multi-agent-mux-loop/`: Autonomous planning-execution-review loop orchestrator.
+        *   `multi-agent-mux-orc-onboard/`: Orchestrator session UUID onboarding and sub-agent isolation helper.
 *   `MESSAGING.md`: Messaging scheme and wire protocol guidelines for MQTT communication between agents.
 
 ---
@@ -190,6 +194,6 @@ rm -f ".mam/jobs/$JID.json" ".mam/jobs/$JID.lock"
 
 ## 7. Onboarding Collaborating Agents (New Agent Onboarding)
 
-Once the setup is verified, onboarding agents should immediately read the **[MULTI_AGENT_RULES.md](.agents/MULTI_AGENT_RULES.md)** guidelines in the .agents/ directory.
+Once the setup is verified, onboarding agents (`claude`, `agy`, `hermes`, `grok`, `opencode`) should immediately read the **[MULTI_AGENT_RULES.md](.agents/MULTI_AGENT_RULES.md)** guidelines in the .agents/ directory.
 
 The guidelines describe essential workflows—such as **surgical change constraints, cross-verification review loops, and pane snapshotting to prevent viewport truncation**—allowing new agents to quickly and safely integrate with the multi-agent workflow.